300 | Discharge | 1016 | 7579 |
Radiology |
ECG |
ECHO |
300 | Discharge | 1016 | 7579 |
Radiology |
ECG |
ECHO |
300 | Discharge | 1016 | 7579 |
Radiology |
ECG |
ECHO |
300 | Discharge | 1016 | 7579 |
Radiology |
ECG |
ECHO |
431 | Discharge | 19 115 | 1701 | |
Radiology | ||||
ECG | ||||
ECHO | ||||
UTHealth | 45 | Clinic visit | 3391 | 428 |
431 | Discharge | 19 115 | 1701 | |
Radiology | ||||
ECG | ||||
ECHO | ||||
UTHealth | 45 | Clinic visit | 3391 | 428 |
431 | Discharge | 19 115 | 1701 | |
Radiology | ||||
ECG | ||||
ECHO | ||||
UTHealth | 45 | Clinic visit | 3391 | 428 |
431 | Discharge | 19 115 | 1701 | |
Radiology | ||||
ECG | ||||
ECHO | ||||
UTHealth | 45 | Clinic visit | 3391 | 428 |
27 317 | 1000 | 93.4 | 15 536 | 915 | 1299 | ||
CV | 2 628 169 | 107 303 | 1,000 | 92.5 | 20 101 | 954 | 1499 |
27 317 | 1000 | 93.4 | 15 536 | 915 | 1299 | ||
CV | 2 628 169 | 107 303 | 1,000 | 92.5 | 20 101 | 954 | 1499 |
27 317 | 1000 | 93.4 | 15 536 | 915 | 1299 | ||
CV | 2 628 169 | 107 303 | 1,000 | 92.5 | 20 101 | 954 | 1499 |
27 317 | 1000 | 93.4 | 15 536 | 915 | 1299 | ||
CV | 2 628 169 | 107 303 | 1,000 | 92.5 | 20 101 | 954 | 1499 |
Lithotripsy | C0023878 | 55.2 | |
Lower lobe | C0225758 | 15.1 | |
Left leg | C1279606 | 13.1 | |
Left lower | C0442068 | 6.30 | |
Balloon | C1704777 | 3.33 | |
Lower lumbar | NA | 2.28 | |
Two | C0205448 | 1.93 | |
Lower leg | C1140621 | 1.40 | |
Left lateral | NA | 1.05 | |
Overall | C1561607 | 0.35 | |
MAC | Monitored anesthesia care | C0497677 | 68.8 |
Mycobacterium avium complex | C0026914 | 16.6 | |
Macular | C0332574 | 8.60 | |
Macaroni | C0452696 | 6.00 |
Lithotripsy | C0023878 | 55.2 | |
Lower lobe | C0225758 | 15.1 | |
Left leg | C1279606 | 13.1 | |
Left lower | C0442068 | 6.30 | |
Balloon | C1704777 | 3.33 | |
Lower lumbar | NA | 2.28 | |
Two | C0205448 | 1.93 | |
Lower leg | C1140621 | 1.40 | |
Left lateral | NA | 1.05 | |
Overall | C1561607 | 0.35 | |
MAC | Monitored anesthesia care | C0497677 | 68.8 |
Mycobacterium avium complex | C0026914 | 16.6 | |
Macular | C0332574 | 8.60 | |
Macaroni | C0452696 | 6.00 |
Lithotripsy | C0023878 | 55.2 | |
Lower lobe | C0225758 | 15.1 | |
Left leg | C1279606 | 13.1 | |
Left lower | C0442068 | 6.30 | |
Balloon | C1704777 | 3.33 | |
Lower lumbar | NA | 2.28 | |
Two | C0205448 | 1.93 | |
Lower leg | C1140621 | 1.40 | |
Left lateral | NA | 1.05 | |
Overall | C1561607 | 0.35 | |
MAC | Monitored anesthesia care | C0497677 | 68.8 |
Mycobacterium avium complex | C0026914 | 16.6 | |
Macular | C0332574 | 8.60 | |
Macaroni | C0452696 | 6.00 |
Lithotripsy | C0023878 | 55.2 | |
Lower lobe | C0225758 | 15.1 | |
Left leg | C1279606 | 13.1 | |
Left lower | C0442068 | 6.30 | |
Balloon | C1704777 | 3.33 | |
Lower lumbar | NA | 2.28 | |
Two | C0205448 | 1.93 | |
Lower leg | C1140621 | 1.40 | |
Left lateral | NA | 1.05 | |
Overall | C1561607 | 0.35 | |
MAC | Monitored anesthesia care | C0497677 | 68.8 |
Mycobacterium avium complex | C0026914 | 16.6 | |
Macular | C0332574 | 8.60 | |
Macaroni | C0452696 | 6.00 |
VUMC corpus | SHARe/CLEF corpus | |||||
---|---|---|---|---|---|---|
Precision | Recall | F1 score | Precision | Recall | F1 score | |
MetaMap | 0.482 | 0.260 | 0.338 | 0.402 | 0.142 | 0.210 |
Ctakes | 0.285 | 0.116 | 0.165 | 0.368 | 0.107 | 0.166 |
CARD | 0.910 | 0.645 | 0.755 | 0.503 | 0.204 | 0.291 |
MetaMap- CARD wrapper | 0.819 | 0.710 | 0.761 | 0.434 | 0.269 | 0.332 |
VUMC corpus | SHARe/CLEF corpus | |||||
---|---|---|---|---|---|---|
Precision | Recall | F1 score | Precision | Recall | F1 score | |
MetaMap | 0.482 | 0.260 | 0.338 | 0.402 | 0.142 | 0.210 |
Ctakes | 0.285 | 0.116 | 0.165 | 0.368 | 0.107 | 0.166 |
CARD | 0.910 | 0.645 | 0.755 | 0.503 | 0.204 | 0.291 |
MetaMap- CARD wrapper | 0.819 | 0.710 | 0.761 | 0.434 | 0.269 | 0.332 |
VUMC corpus | SHARe/CLEF corpus | |||||
---|---|---|---|---|---|---|
Precision | Recall | F1 score | Precision | Recall | F1 score | |
MetaMap | 0.482 | 0.260 | 0.338 | 0.402 | 0.142 | 0.210 |
Ctakes | 0.285 | 0.116 | 0.165 | 0.368 | 0.107 | 0.166 |
CARD | 0.910 | 0.645 | 0.755 | 0.503 | 0.204 | 0.291 |
MetaMap- CARD wrapper | 0.819 | 0.710 | 0.761 | 0.434 | 0.269 | 0.332 |
VUMC corpus | SHARe/CLEF corpus | |||||
---|---|---|---|---|---|---|
Precision | Recall | F1 score | Precision | Recall | F1 score | |
MetaMap | 0.482 | 0.260 | 0.338 | 0.402 | 0.142 | 0.210 |
Ctakes | 0.285 | 0.116 | 0.165 | 0.368 | 0.107 | 0.166 |
CARD | 0.910 | 0.645 | 0.755 | 0.503 | 0.204 | 0.291 |
MetaMap- CARD wrapper | 0.819 | 0.710 | 0.761 | 0.434 | 0.269 | 0.332 |
SemEval | UTHealth | |||
---|---|---|---|---|
NER F1 (Pre/Rec) | Encoding Acc | NER F1 (Pre/Rec) | Encoding Acc | |
All entities | ||||
MetaMap | 0.566 (0.654/0.499) | 0.442 | 0.515 (0.567/0.471) | 0.384 |
cTAKES | 0.411(0.323/ 0.564) | 0.439 | 0.404(0.359/ 0.461) | 0.385 |
MetaMap-CARD | 0.576 (0.648/0.518) | 0.453 | 0.535 (0.568/0.506) | 0.413 |
Abbreviations only | ||||
MetaMap | 0.494 (0.741/0.371) | 0.327 | 0.552 (0.683/0.463) | 0.238 |
cTAKES | 0.468(0.571/0.396) | 0.259 | 0.295(0.619/0.194) | 0.124 |
MetaMap-CARD | 0.601 (0.541/0.677) | 0.429 | 0.719 (0.715/0.722) | 0.423 |
SemEval | UTHealth | |||
---|---|---|---|---|
NER F1 (Pre/Rec) | Encoding Acc | NER F1 (Pre/Rec) | Encoding Acc | |
All entities | ||||
MetaMap | 0.566 (0.654/0.499) | 0.442 | 0.515 (0.567/0.471) | 0.384 |
cTAKES | 0.411(0.323/ 0.564) | 0.439 | 0.404(0.359/ 0.461) | 0.385 |
MetaMap-CARD | 0.576 (0.648/0.518) | 0.453 | 0.535 (0.568/0.506) | 0.413 |
Abbreviations only | ||||
MetaMap | 0.494 (0.741/0.371) | 0.327 | 0.552 (0.683/0.463) | 0.238 |
cTAKES | 0.468(0.571/0.396) | 0.259 | 0.295(0.619/0.194) | 0.124 |
MetaMap-CARD | 0.601 (0.541/0.677) | 0.429 | 0.719 (0.715/0.722) | 0.423 |
SemEval | UTHealth | |||
---|---|---|---|---|
NER F1 (Pre/Rec) | Encoding Acc | NER F1 (Pre/Rec) | Encoding Acc | |
All entities | ||||
MetaMap | 0.566 (0.654/0.499) | 0.442 | 0.515 (0.567/0.471) | 0.384 |
cTAKES | 0.411(0.323/ 0.564) | 0.439 | 0.404(0.359/ 0.461) | 0.385 |
MetaMap-CARD | 0.576 (0.648/0.518) | 0.453 | 0.535 (0.568/0.506) | 0.413 |
Abbreviations only | ||||
MetaMap | 0.494 (0.741/0.371) | 0.327 | 0.552 (0.683/0.463) | 0.238 |
cTAKES | 0.468(0.571/0.396) | 0.259 | 0.295(0.619/0.194) | 0.124 |
MetaMap-CARD | 0.601 (0.541/0.677) | 0.429 | 0.719 (0.715/0.722) | 0.423 |
SemEval | UTHealth | |||
---|---|---|---|---|
NER F1 (Pre/Rec) | Encoding Acc | NER F1 (Pre/Rec) | Encoding Acc | |
All entities | ||||
MetaMap | 0.566 (0.654/0.499) | 0.442 | 0.515 (0.567/0.471) | 0.384 |
cTAKES | 0.411(0.323/ 0.564) | 0.439 | 0.404(0.359/ 0.461) | 0.385 |
MetaMap-CARD | 0.576 (0.648/0.518) | 0.453 | 0.535 (0.568/0.506) | 0.413 |
Abbreviations only | ||||
MetaMap | 0.494 (0.741/0.371) | 0.327 | 0.552 (0.683/0.463) | 0.238 |
cTAKES | 0.468(0.571/0.396) | 0.259 | 0.295(0.619/0.194) | 0.124 |
MetaMap-CARD | 0.601 (0.541/0.677) | 0.429 | 0.719 (0.715/0.722) | 0.423 |